Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A0A0N7KGP6 | A0A0P0XIX9 | A0A0N7KGP6 | A0A0P0XIX9 | Os03g0178950 protein. | Os09g0250300 protein. | 0.747 |
A0A0N7KGP6 | OsJ_25429 | A0A0N7KGP6 | Q70G58 | Os03g0178950 protein. | Thioredoxin reductase NTRC; Thioredoxin reductase (TR) that exhibits both TR and thioredoxin (Trx) activities. Contains a C-terminal functional Trx domain. Functions as an electron donor for the plastidial 2-Cys peroxiredoxin BAS1 and participates in a NADPH-dependent hydrogen peroxide scavenging system in chloroplasts in the dark. | 0.456 |
A0A0N7KGP6 | Q8H2T7_ORYSJ | A0A0N7KGP6 | Q8H2T7 | Os03g0178950 protein. | NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. | 0.990 |
A0A0N7KGP6 | Q8W317_ORYSJ | A0A0N7KGP6 | Q8W317 | Os03g0178950 protein. | NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial, putative, expressed; Belongs to the complex I 75 kDa subunit family. | 0.992 |
A0A0N7KGP6 | cox3 | A0A0N7KGP6 | Q8HCR6 | Os03g0178950 protein. | Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex. | 0.995 |
A0A0P0XIX9 | A0A0N7KGP6 | A0A0P0XIX9 | A0A0N7KGP6 | Os09g0250300 protein. | Os03g0178950 protein. | 0.747 |
A0A0P0XIX9 | NIA1 | A0A0P0XIX9 | P16081 | Os09g0250300 protein. | Nitrate reductase [NADH] 1; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. | 0.878 |
A0A0P0XIX9 | OsJ_25429 | A0A0P0XIX9 | Q70G58 | Os09g0250300 protein. | Thioredoxin reductase NTRC; Thioredoxin reductase (TR) that exhibits both TR and thioredoxin (Trx) activities. Contains a C-terminal functional Trx domain. Functions as an electron donor for the plastidial 2-Cys peroxiredoxin BAS1 and participates in a NADPH-dependent hydrogen peroxide scavenging system in chloroplasts in the dark. | 0.897 |
A0A0P0XIX9 | Q10QN3_ORYSJ | A0A0P0XIX9 | Q10QN3 | Os09g0250300 protein. | 1,4-dihydroxy-2-naphthoate phytyltransferase family protein, expressed. | 0.797 |
A0A0P0XIX9 | Q6ZC33_ORYSJ | A0A0P0XIX9 | Q6ZC33 | Os09g0250300 protein. | Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. | 0.878 |
A0A0P0XIX9 | Q6ZHH7_ORYSJ | A0A0P0XIX9 | Q6ZHH7 | Os09g0250300 protein. | Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. | 0.878 |
A0A0P0XIX9 | Q8H2T7_ORYSJ | A0A0P0XIX9 | Q8H2T7 | Os09g0250300 protein. | NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. | 0.759 |
A0A0P0XIX9 | Q8W317_ORYSJ | A0A0P0XIX9 | Q8W317 | Os09g0250300 protein. | NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial, putative, expressed; Belongs to the complex I 75 kDa subunit family. | 0.752 |
A0A0P0XIX9 | cox3 | A0A0P0XIX9 | Q8HCR6 | Os09g0250300 protein. | Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex. | 0.840 |
A0A0P0XIX9 | petC | A0A0P0XIX9 | Q69S39 | Os09g0250300 protein. | Cytochrome b6-f complex iron-sulfur subunit, chloroplastic; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. | 0.770 |
NIA1 | A0A0P0XIX9 | P16081 | A0A0P0XIX9 | Nitrate reductase [NADH] 1; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. | Os09g0250300 protein. | 0.878 |
NIA1 | OsJ_25429 | P16081 | Q70G58 | Nitrate reductase [NADH] 1; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. | Thioredoxin reductase NTRC; Thioredoxin reductase (TR) that exhibits both TR and thioredoxin (Trx) activities. Contains a C-terminal functional Trx domain. Functions as an electron donor for the plastidial 2-Cys peroxiredoxin BAS1 and participates in a NADPH-dependent hydrogen peroxide scavenging system in chloroplasts in the dark. | 0.948 |
NIA1 | Q6ZC33_ORYSJ | P16081 | Q6ZC33 | Nitrate reductase [NADH] 1; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. | Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. | 0.999 |
NIA1 | Q6ZHH7_ORYSJ | P16081 | Q6ZHH7 | Nitrate reductase [NADH] 1; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. | Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. | 0.999 |
NIA1 | Q8H2T7_ORYSJ | P16081 | Q8H2T7 | Nitrate reductase [NADH] 1; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. | NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. | 0.550 |
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