STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0XUK4Os10g0438950 protein. (178 aa)    
Predicted Functional Partners:
A0A0P0XCN7
Os08g0199900 protein.
   
 
 0.595
Q10MC6_ORYSJ
Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed.
   
 
 0.595
OsJ_24703
Eukaryotic translation initiation factor 4G; Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome; Belongs to the eukaryotic initiation factor 4G family.
   
 
 0.535
C3H43_ORYSJ
Zinc finger CCCH domain-containing protein 43.
   
 
 0.535
OJ1004_A05.11
Eukaryotic translation initiation factor isoform 4G-2; Plays a role in the accumulation of a sobemovirus (RYMV) during viral infection; Belongs to the eukaryotic initiation factor 4G family.
   
 
 0.535
IF4G1_ORYSJ
Eukaryotic translation initiation factor isoform 4G-1; Plays a role in the accumulation of a sobemovirus (RYMV) during viral infection.
   
 
 0.535
Q6K852_ORYSJ
Os02g0804300 protein.
   
 
 0.486
A0A0P0Y7P3
Os12g0166500 protein.
   
    0.474
A0A0P0V7B9
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
   0.458
Q7XDT2_ORYSJ
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
   0.458
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.