Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A0A0P0X1D1 | A0A0P0Y083 | A0A0P0X1D1 | A0A0P0Y083 | Os06g0729650 protein. | Os11g0201299 protein. | 0.401 |
A0A0P0X1D1 | C7J1U6_ORYSJ | A0A0P0X1D1 | C7J1U6 | Os06g0729650 protein. | Os04g0589400 protein. | 0.475 |
A0A0P0Y083 | A0A0P0X1D1 | A0A0P0Y083 | A0A0P0X1D1 | Os11g0201299 protein. | Os06g0729650 protein. | 0.401 |
A0A0P0Y083 | C7J1U6_ORYSJ | A0A0P0Y083 | C7J1U6 | Os11g0201299 protein. | Os04g0589400 protein. | 0.496 |
A0A0P0Y083 | HCF136 | A0A0P0Y083 | Q5Z5A8 | Os11g0201299 protein. | Photosystem II stability/assembly factor HCF136, chloroplastic; Essential for photosystem II (PSII) biogenesis; required for assembly of an early intermediate in PSII assembly that includes D2 (psbD) and cytochrome b559; Belongs to the Ycf48 family. | 0.401 |
C7J1U6_ORYSJ | A0A0P0X1D1 | C7J1U6 | A0A0P0X1D1 | Os04g0589400 protein. | Os06g0729650 protein. | 0.475 |
C7J1U6_ORYSJ | A0A0P0Y083 | C7J1U6 | A0A0P0Y083 | Os04g0589400 protein. | Os11g0201299 protein. | 0.496 |
C7J1U6_ORYSJ | HCF136 | C7J1U6 | Q5Z5A8 | Os04g0589400 protein. | Photosystem II stability/assembly factor HCF136, chloroplastic; Essential for photosystem II (PSII) biogenesis; required for assembly of an early intermediate in PSII assembly that includes D2 (psbD) and cytochrome b559; Belongs to the Ycf48 family. | 0.475 |
HCF136 | A0A0P0Y083 | Q5Z5A8 | A0A0P0Y083 | Photosystem II stability/assembly factor HCF136, chloroplastic; Essential for photosystem II (PSII) biogenesis; required for assembly of an early intermediate in PSII assembly that includes D2 (psbD) and cytochrome b559; Belongs to the Ycf48 family. | Os11g0201299 protein. | 0.401 |
HCF136 | C7J1U6_ORYSJ | Q5Z5A8 | C7J1U6 | Photosystem II stability/assembly factor HCF136, chloroplastic; Essential for photosystem II (PSII) biogenesis; required for assembly of an early intermediate in PSII assembly that includes D2 (psbD) and cytochrome b559; Belongs to the Ycf48 family. | Os04g0589400 protein. | 0.475 |