STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0Y0H6Os11g0218200 protein. (83 aa)    
Predicted Functional Partners:
A0A0P0VBC1
Os01g0889200 protein.
     
  0.540
A0A0P0VD80
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
     
  0.540
A0A0P0W0R9
Os03g0609200 protein.
     
  0.540
A0A0P0W9L1
Os04g0394500 protein.
     
  0.540
A0A0P0X0W6
Os06g0697400 protein.
     
  0.540
A0A0P0X1I6
Os07g0105100 protein.
     
  0.540
A0A0P0XVR4
Os10g0495600 protein; Belongs to the RNA polymerase beta chain family.
     
  0.540
A0A0P0Y7J1
Os12g0180400 protein.
     
  0.540
B7EQI7_ORYSJ
cDNA clone:J023098I05, full insert sequence.
     
  0.540
B9GDH8_ORYSJ
Os12g0533600 protein.
     
  0.540
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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