STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0Y1A9Os11g0269100 protein; Belongs to the universal ribosomal protein uL16 family. (137 aa)    
Predicted Functional Partners:
rpl14
50S ribosomal protein L14, chloroplastic; Binds to 23S rRNA.
 
 0.996
rpl2-A
50S ribosomal protein L2, chloroplastic.
 
 0.992
RPL27
50S ribosomal protein L27, chloroplastic; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.990
Q5ZA34_ORYSJ
cDNA clone:001-028-E08, full insert sequence.
   
 0.990
Q9LWD2_ORYSJ
cDNA clone:001-104-E12, full insert sequence.
   
 
 0.990
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
  
 
 0.989
Q0DHP9_ORYSJ
Os05g0452600 protein.
  
 0.987
RPL5
50S ribosomal protein L5, chloroplastic; Binds 5S rRNA, forms part of the central protuberance of the 50S subunit.
 
 0.987
Q653V9_ORYSJ
cDNA clone:006-303-A09, full insert sequence; Belongs to the universal ribosomal protein uL24 family.
  
 0.986
A3A2Y2_ORYSJ
Os02g0137200 protein; Belongs to the universal ribosomal protein uL3 family.
  
 0.983
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.