STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0Y7I6Os12g0171200 protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (594 aa)    
Predicted Functional Partners:
A0A0P0VSI0
Os03g0117000 protein.
  
    0.843
Q10SL7_ORYSJ
Dihydrodipicolinate reductase, C-terminus family protein, expressed.
  
    0.843
A0A0N7KGI5
Os03g0129200 protein.
  
 0.710
Q0JHU4_ORYSJ
Os01g0841800 protein.
  
 0.710
Q6Z6A3_ORYSJ
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
  
 0.710
PNP1
Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic; Involved in the metabolism of all major classes of plastid RNAs. Required for efficient 3'-end processing of mRNAs and 3'-end maturation of rRNA transcripts, but is not sufficient to mediate their degradation. Mediates tRNA degradation. May function as a poly(A) mRNA 3'-5' degrading phosphorylase (By similarity).
  
 0.683
PNP2
Polyribonucleotide nucleotidyltransferase 2, mitochondrial; Involved in the 3'-end maturation of mitochondrial mRNAs, rRNAs and tRNAs. Functions as a poly(A) mRNA 3'-5' degrading phosphorylase (By similarity).
  
 0.683
A0A0N7KSE9
Os11g0142300 protein.
  
 0.672
A0A0P0V705
Os01g0698200 protein.
  
 0.672
A0A0P0XLT0
Os09g0374900 protein.
  
 0.672
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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