Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A0A0P0V1K5 | B9FGZ9_ORYSJ | A0A0P0V1K5 | B9FGZ9 | Os01g0276200 protein. | Os05g0348632 protein. | 0.489 |
A0A0P0V1K5 | Q10M45_ORYSJ | A0A0P0V1K5 | Q10M45 | Os01g0276200 protein. | Mitochondrial import receptor subunit TOM40, putative, expressed. | 0.550 |
A0A0P0VSV2 | B9FGZ9_ORYSJ | A0A0P0VSV2 | B9FGZ9 | Os03g0141000 protein. | Os05g0348632 protein. | 0.518 |
A0A0P0VSV2 | rpl2-A | A0A0P0VSV2 | P0C497 | Os03g0141000 protein. | 50S ribosomal protein L2, chloroplastic. | 0.991 |
A0A0P0X2C5 | B9FGZ9_ORYSJ | A0A0P0X2C5 | B9FGZ9 | Os07g0129600 protein. | Os05g0348632 protein. | 0.459 |
A0A0P0X2C5 | Q5VND0_ORYSJ | A0A0P0X2C5 | Q5VND0 | Os07g0129600 protein. | cDNA clone:J023002O16, full insert sequence. | 0.963 |
A0A0P0XW06 | B9FGZ9_ORYSJ | A0A0P0XW06 | B9FGZ9 | Os10g0465800 protein. | Os05g0348632 protein. | 0.518 |
A0A0P0XW06 | rpl2-A | A0A0P0XW06 | P0C497 | Os10g0465800 protein. | 50S ribosomal protein L2, chloroplastic. | 0.991 |
B9FGZ9_ORYSJ | A0A0P0V1K5 | B9FGZ9 | A0A0P0V1K5 | Os05g0348632 protein. | Os01g0276200 protein. | 0.489 |
B9FGZ9_ORYSJ | A0A0P0VSV2 | B9FGZ9 | A0A0P0VSV2 | Os05g0348632 protein. | Os03g0141000 protein. | 0.518 |
B9FGZ9_ORYSJ | A0A0P0X2C5 | B9FGZ9 | A0A0P0X2C5 | Os05g0348632 protein. | Os07g0129600 protein. | 0.459 |
B9FGZ9_ORYSJ | A0A0P0XW06 | B9FGZ9 | A0A0P0XW06 | Os05g0348632 protein. | Os10g0465800 protein. | 0.518 |
B9FGZ9_ORYSJ | Q10M45_ORYSJ | B9FGZ9 | Q10M45 | Os05g0348632 protein. | Mitochondrial import receptor subunit TOM40, putative, expressed. | 0.489 |
B9FGZ9_ORYSJ | Q5VND0_ORYSJ | B9FGZ9 | Q5VND0 | Os05g0348632 protein. | cDNA clone:J023002O16, full insert sequence. | 0.597 |
B9FGZ9_ORYSJ | psbD | B9FGZ9 | P0C437 | Os05g0348632 protein. | Photosystem II D2 protein; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex. | 0.500 |
B9FGZ9_ORYSJ | psbE | B9FGZ9 | P0C370 | Os05g0348632 protein. | Cytochrome b559 subunit alpha; This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. Belongs to the PsbE/PsbF family. | 0.501 |
B9FGZ9_ORYSJ | psbF | B9FGZ9 | P0C401 | Os05g0348632 protein. | Cytochrome b559 subunit beta; This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. Belongs to the PsbE/PsbF family. | 0.503 |
B9FGZ9_ORYSJ | rpl2-A | B9FGZ9 | P0C497 | Os05g0348632 protein. | 50S ribosomal protein L2, chloroplastic. | 0.463 |
Q10M45_ORYSJ | A0A0P0V1K5 | Q10M45 | A0A0P0V1K5 | Mitochondrial import receptor subunit TOM40, putative, expressed. | Os01g0276200 protein. | 0.550 |
Q10M45_ORYSJ | B9FGZ9_ORYSJ | Q10M45 | B9FGZ9 | Mitochondrial import receptor subunit TOM40, putative, expressed. | Os05g0348632 protein. | 0.489 |
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