STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAC12Laccase-12; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (574 aa)    
Predicted Functional Partners:
PETE
Plastocyanin, chloroplastic; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.
   
 0.700
A0A0P0WS15
Os06g0111600 protein.
     
 0.662
OsJ_17006
Solute carrier family 40 member 3, chloroplastic; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.
    
 0.627
S40A2_ORYSJ
Solute carrier family 40 member 2, chloroplastic; May be involved in iron transport and iron homeostasis.
    
 0.627
P0528E12.13
Solute carrier family 40 member 1; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.
    
 0.627
HMA4
Copper-transporting ATPase HMA4; Copper (Cu) transporter that mediates Cu transport in root vacuoles. Involved in Cu detoxification by sequestrating Cu into root vacuoles and limiting translocation of Cu from the roots to the shoots, and accumulation in grains.
  
 
 0.594
SLY1
SEC1 family transport protein SLY1; May be involved in the early secretory pathway.
     
 0.592
HMA5
Copper-transporting ATPase HMA5; Copper (Cu) transporter that plays an essential role in promoting translocation of Cu from roots to shoots. Involved in loading Cu to the xylem of the roots and other organs, including panicles. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.
  
 
 0.587
A0A0N7KES2
Os02g0172600 protein.
  
 
 0.549
A0A0P0VTT2
Os03g0178100 protein.
  
 
 0.549
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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