STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7EYT0_ORYSJCTD phosphatase-like protein. (462 aa)    
Predicted Functional Partners:
Q10P09_ORYSJ
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.902
Q53QT1_ORYSJ
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.902
Q10NZ2_ORYSJ
Os03g0253800 protein.
   
 0.818
A0A0P0V5Q4
Os01g0637100 protein.
    
 0.797
A0A0P0WNA4
Os05g0462301 protein.
    
 0.797
Q0IRM9_ORYSJ
Os11g0615000 protein.
    
 0.797
Q6L4Z4_ORYSJ
Os05g0462400 protein.
    
 0.797
Q6ZA50_ORYSJ
cDNA clone:J013053F13, full insert sequence.
    
 0.780
A0A0P0VMT4
Os02g0672500 protein.
    
 0.759
Q7XSA1_ORYSJ
Os04g0566700 protein.
    
 0.759
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.