STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
O82116_ORYSJcDNA clone:001-029-D01, full insert sequence. (360 aa)    
Predicted Functional Partners:
A0A0P0XCG2
Os08g0178800 protein.
    
 
 0.547
Q6Z2L0_ORYSJ
Os02g0731700 protein.
  
 
 
 0.518
PPS
cDNA clone:J013104O14, full insert sequence.
    
 
 0.469
A0A0P0WC73
Os04g0493000 protein.
    
 
 0.454
A0A0P0VD82
Os01g0964400 protein.
      
 0.446
O82112_ORYSJ
cDNA clone:J013111C11, full insert sequence.
  
 
0.429
Q0DD26_ORYSJ
Os06g0264200 protein.
    
 
 0.419
A0A0N7KMD3
Os06g0601500 protein.
    
 
 0.413
A0A0P0UYZ1
Os01g0174000 protein.
    
 
 0.413
A0A0P0VG62
Os02g0203000 protein.
    
 
 0.413
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.