STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q0DB62_ORYSJOs06g0598900 protein. (342 aa)    
Predicted Functional Partners:
Q6Z6C8_ORYSJ
Os02g0205400 protein.
  
  
 
0.940
Q0IXE8_ORYSJ
Os10g0443200 protein.
    
   0.692
Q6Z7S5_ORYSJ
Os02g0740900 protein.
  
 
 
 0.593
EIF4A3B
Eukaryotic initiation factor 4A-III homolog B; ATP-dependent RNA helicase. Core component of the splicing- dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs throu [...]
   
 0.591
Q338P9_ORYSJ
cDNA clone:J033057B06, full insert sequence.
   
 0.591
EIF4A3A
Eukaryotic initiation factor 4A-III homolog A; ATP-dependent RNA helicase. Core component of the splicing- dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs throu [...]
   
 0.591
A0A0P0WUH4
Os06g0238700 protein.
  
 
 
 0.585
A0A0P0WBW4
Os04g0481600 protein.
  
 
 
 0.583
Q2R037_ORYSJ
Os11g0660300 protein.
  
 
 
 0.582
A0A0P0XGM0
Os08g0447500 protein.
   
 0.564
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.