STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q0DR89_ORYSJOs03g0407000 protein. (360 aa)    
Predicted Functional Partners:
Q10LL9_ORYSJ
cDNA clone:001-025-A01, full insert sequence.
   
    0.767
Q850Z4_ORYSJ
Os03g0831100 protein.
   
  
 0.695
B7EZK3_ORYSJ
cDNA clone:002-114-D09, full insert sequence.
   
 
 0.693
Q0DGP5_ORYSJ
Os05g0519500 protein.
   
    0.693
OsJ_01990
Ribosome production factor 2 homolog.
   
 
 0.693
A0A0P0V835
Os01g0746000 protein.
     
 0.635
A0A0P0XLG1
Os09g0315700 protein.
     
 0.635
Q5JLS6_ORYSJ
Os01g0758300 protein.
     
 0.635
Q5QMQ3_ORYSJ
cDNA clone:J013110J02, full insert sequence.
     
 0.635
Q5QNA5_ORYSJ
cDNA clone:J013071A07, full insert sequence.
     
 0.635
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.