STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q0E1W5_ORYSJcDNA clone:J013000E01, full insert sequence. (123 aa)    
Predicted Functional Partners:
Q0JL19_ORYSJ
Os01g0631200 protein; Belongs to the precorrin methyltransferase family.
  
 
 0.988
Q5N7T3_ORYSJ
Os01g0855200 protein.
  
 
 0.944
A0A0P0VXZ5
Os03g0340001 protein.
    
 0.902
OsJ_10762
Uroporphyrinogen decarboxylase 2, chloroplastic; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
    
 0.902
OsJ_02650
Uroporphyrinogen decarboxylase 1, chloroplastic; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
    
 0.902
HEM1_ORYSJ
Glutamyl-tRNA reductase, chloroplastic; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
  
 
 0.855
A0A0N7KJA0
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
     
 0.840
C7J813_ORYSJ
Os10g0473800 protein.
     
 0.840
Q0JC62_ORYSJ
Os04g0490000 protein.
     
 0.840
PPOX1
Protoporphyrinogen oxidase, chloroplastic; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
     
 0.840
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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