STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q0IQ60_ORYSJOs12g0143300 protein. (112 aa)    
Predicted Functional Partners:
Q10N76_ORYSJ
cDNA clone:006-206-F02, full insert sequence.
   
 0.961
A0A0P0V657
Os01g0660500 protein.
    
 0.873
Q7XHW1_ORYSJ
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
    
 0.873
A0A0P0VEM7
Os02g0139600 protein.
   
 0.836
A0A0P0WPC1
Os05g0513300 protein.
   
 0.836
A0A0P0WPI8
Os05g0513350 protein.
   
 0.836
A0A0P0X6F8
Os07g0485400 protein.
   
 0.836
Q2QSX5_ORYSJ
tRNA synthetases class II family protein, expressed.
   
 0.836
Q6ZHC3_ORYSJ
cDNA clone:J013093E04, full insert sequence.
   
 0.836
Q93WM3_ORYSJ
Os01g0372700 protein.
   
 0.836
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.