STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q0J1A5_ORYSJOs09g0453700 protein. (196 aa)    
Predicted Functional Partners:
Q6Z8B5_ORYSJ
cDNA clone:002-105-E02, full insert sequence.
   
 
 0.504
B1189A09.47
DEAD-box ATP-dependent RNA helicase 18; Belongs to the DEAD box helicase family. DDX55/SPB4 subfamily.
   
  
 0.483
P0650C03.25
DEAD-box ATP-dependent RNA helicase 32; Belongs to the DEAD box helicase family. DDX10/DBP4 subfamily.
      
 0.453
RH17
DEAD-box ATP-dependent RNA helicase 17; May play a role in organellar ribosome biogenesis and suppress 16S rRNA maturation.
      
 0.453
Q10RG1_ORYSJ
RNA helicase SDE3, putative, expressed.
      
 0.408
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.