STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS4Syn-copalyl diphosphate synthase; Catalyzes the conversion of geranylgeranyl diphosphate to the phytoalexin precursor syn-copalyl diphosphate. (767 aa)    
Predicted Functional Partners:
CHLP
Geranylgeranyl diphosphate reductase, chloroplastic; Catalyzes the reduction of geranylgeranyl diphosphate to phytyl diphosphate, providing phytol for both tocopherol and chlorophyll synthesis.
  
 0.896
Q6ET88_ORYSJ
cDNA clone:001-204-C07, full insert sequence; Belongs to the FPP/GGPP synthase family.
    
 0.883
A0A0P0WDI2
Os04g0561350 protein.
  
 0.860
Q5NB98_ORYSJ
Os01g0265000 protein.
  
 0.860
A0A0P0VDY6
Os02g0107200 protein.
  
 0.852
A0A0P0WJL3
Os05g0235701 protein.
    
 0.852
Q6ETS8_ORYSJ
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.
  
 0.852
Q7XI92_ORYSJ
cDNA clone:J023007O22, full insert sequence; Belongs to the FPP/GGPP synthase family.
    
 0.852
SPS3
Probable solanesyl-diphosphate synthase 3, chloroplastic; Involved in providing solanesyl diphosphate for plastoquinone-9 (PQ-9) formation.
    
 0.850
CPS1
Ent-copalyl diphosphate synthase 1, chloroplastic; Catalyzes the conversion of geranylgeranyl diphosphate to the gibberellin precursor ent-copalyl diphosphate. Belongs to the terpene synthase family.
  
  
0.850
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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