STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q0JHQ5_ORYSJcDNA clone:002-174-G09, full insert sequence. (68 aa)    
Predicted Functional Partners:
A0A0P0W347
Os03g0726900 protein.
    
 0.895
Q337B1_ORYSJ
DNA excision repair protein ERCC-1, putative, expressed.
   
 0.855
P0416G11.21-1
NPL4-like protein; May be part of a complex that binds ubiquitinated proteins and that is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome. Belongs to the NPL4 family.
    
 0.850
A0A0P0X2T8
Os07g0154400 protein.
   
 0.846
A0A0P0XZP0
Os11g0180600 protein.
    
 0.816
Q10T59_ORYSJ
cDNA clone:J013151H20, full insert sequence.
    
 0.798
Q10T60_ORYSJ
Os03g0100300 protein.
    
 0.798
A0A0P0XJ66
Os08g0558000 protein.
   
 0.750
RPL10A
60S ribosomal protein L10a.
   
 0.750
B7F9R7_ORYSJ
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
   
 0.750
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.