STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q0JJC6_ORYSJOs01g0748100 protein. (101 aa)    
Predicted Functional Partners:
A0A0P0VL78
Os02g0596100 protein.
    
 0.808
A2ZWM2_ORYSJ
cDNA, clone: J053058F10, full insert sequence.
    
 0.691
Q6I632_ORYSJ
cDNA clone:J033138P03, full insert sequence.
    
 0.691
A0A0P0XU17
Os10g0411700 protein.
   
   0.688
OJ1003_C09.2
Protein HIRA; Histone chaperone involved in maintining knox genes silencing throughout leaf development; Belongs to the WD repeat HIR1 family.
    
 0.669
RPS19A
40S ribosomal protein S19; Belongs to the eukaryotic ribosomal protein eS19 family.
   
 
 0.649
Q8LQM0_ORYSJ
cDNA clone:001-017-D01, full insert sequence.
    
 0.640
Q7XZX4_ORYSJ
40S ribosomal protein S29, putative, expressed.
   
   0.630
A0A0P0Y588
Os11g0643700 protein.
    
 0.619
A0A0N7KTI7
Os12g0129650 protein.
    
  0.613
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.