STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q0JLE6_ORYSJcDNA clone:001-123-D05, full insert sequence; Belongs to the ubiquitin-conjugating enzyme family. (556 aa)    
Predicted Functional Partners:
A0A0P0WHC1
Os05g0122400 protein.
   
 0.952
Q0DHI3_ORYSJ
Os05g0463900 protein.
   
 0.952
Q0E4T3_ORYSJ
Os02g0101700 protein.
   
 0.948
A0A0P0WLY1
Os05g0392000 protein.
    
 0.893
A0A0P0WM13
Os05g0392050 protein.
    
 0.893
A0A0P0W347
Os03g0726900 protein.
  
 
 0.891
A0A0P0X2T8
Os07g0154400 protein.
  
 0.858
Q0DSK3_ORYSJ
Os03g0302700 protein.
    
 0.857
Q8H306_ORYSJ
cDNA, clone: J065192I01, full insert sequence.
    
 0.857
RPS27AB
Ubiquitin-40S ribosomal protein S27a-2; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is invol [...]
    
 0.847
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.