STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q10BD5_ORYSJFtsJ-like methyltransferase family protein, putative, expressed. (233 aa)    
Predicted Functional Partners:
Q84RU7_ORYSJ
cDNA clone:J023075L15, full insert sequence.
   
 
 0.993
BOP1
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 
 0.992
Q656B0_ORYSJ
cDNA clone:J033145O08, full insert sequence.
   
 
 0.990
Q6Z568_ORYSJ
cDNA clone:001-031-A04, full insert sequence.
   
 
 0.989
PES
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
   0.989
WDR12
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 
 0.988
B1189A09.47
DEAD-box ATP-dependent RNA helicase 18; Belongs to the DEAD box helicase family. DDX55/SPB4 subfamily.
   
 0.987
Q0D674_ORYSJ
cDNA clone:J033071L22, full insert sequence.
   
 
 0.985
Q0DES6_ORYSJ
cDNA clone:J023145C13, full insert sequence.
   
 
 0.984
Q6L594_ORYSJ
cDNA clone:002-142-A04, full insert sequence.
   
 
 0.984
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.