STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q10CF1_ORYSJOs03g0785300 protein. (943 aa)    
Predicted Functional Partners:
Q0DY92_ORYSJ
Os02g0708300 protein.
    
 0.678
Q0JRD5_ORYSJ
cDNA clone:001-025-F02, full insert sequence.
    
 0.678
Q6ETS8_ORYSJ
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.
   
 
  0.643
A0A0P0VDK6
Os02g0101600 protein; Belongs to the SKP1 family.
   
  0.566
SKP20
SKP1-like protein 20; Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, a RING-box and a F- box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1; Belongs to the SKP1 family.
   
  0.566
A0A0P0VS32
Os03g0107000 protein; Belongs to the SKP1 family.
    
  0.563
A0A0P0WRF1
Os06g0111200 protein.
    
  0.563
A0A0P0X2H5
Os07g0144900 protein.
    
  0.563
A0A0P0X908
Os07g0625400 protein; Belongs to the SKP1 family.
    
  0.563
A0A0P0XN22
Os09g0412050 protein; Belongs to the SKP1 family.
    
  0.563
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.