STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q10LH9_ORYSJNuclear pore protein. (870 aa)    
Predicted Functional Partners:
Q5ZBF5_ORYSJ
cDNA clone:J023044A10, full insert sequence; Belongs to the WD repeat SEC13 family.
   
 0.998
A0A0P0VG25
Os02g0202250 protein.
   
 0.997
A0A0P0Y588
Os11g0643700 protein.
   
 0.997
Q0E2Z5_ORYSJ
Os02g0202300 protein.
   
 0.997
Q6YVE2_ORYSJ
cDNA clone:001-023-C01, full insert sequence.
   
 0.997
A0A0N7KRG2
Os10g0154600 protein.
   
 0.996
A0A0P0XSU3
Os10g0154566 protein.
   
 0.996
Q8LQM0_ORYSJ
cDNA clone:001-017-D01, full insert sequence.
    
 0.996
A0A0P0WEN1
Os04g0608400 protein.
    
 0.992
GATC
Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
   
 0.991
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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