STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q10NG1_ORYSJFringe protein, putative, expressed. (527 aa)    
Predicted Functional Partners:
MCCA
Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial; Biotin-attachment subunit of the 3-methylcrotonyl-CoA carboxylase, an enzyme that catalyzes the conversion of 3- methylcrotonyl-CoA to 3-methylglutaconyl-CoA, a critical step for leucine and isovaleric acid catabolism.
    
 0.845
Q6YX88_ORYSJ
cDNA clone:006-305-H09, full insert sequence.
    
  0.791
A0A0P0X0W6
Os06g0697400 protein.
    
  0.788
Q84SP5_ORYSJ
RNA polymerase Rpb8 family protein, expressed; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
  0.788
Q6ZA50_ORYSJ
cDNA clone:J013053F13, full insert sequence.
    
  0.786
Q6ZGM1_ORYSJ
cDNA clone:J023131N03, full insert sequence.
    
  0.778
Q8LHK9_ORYSJ
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.762
B7F9H3_ORYSJ
cDNA, clone: J080032M07, full insert sequence.
    
  0.730
A0A0N7KPV9
Os08g0426000 protein.
    
 0.710
Q6F2V1_ORYSJ
DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed.
    
 0.710
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.