STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q10NT2_ORYSJcDNA, clone: J100029H23, full insert sequence. (636 aa)    
Predicted Functional Partners:
HRD3
ERAD-associated E3 ubiquitin-protein ligase component HRD3; Component of the endoplasmic reticulum (ER) quality control system called ER-associated degradation (ERAD) and involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Functions as an ERAD substrate-recruiting factor that recognizes misfolded proteins for the HRD1 E3 ubiquitin ligase complex. Belongs to the sel-1 family.
      
 0.613
RGP2
Ras-related protein RGP2.
   
  0.531
A0A0P0X6W3
Os07g0533201 protein.
    
  0.528
WOX12
WUSCHEL-related homeobox 12; Transcription factor which may be involved in developmental processes; Belongs to the WUS homeobox family.
    
  0.528
WOX13
WUSCHEL-related homeobox 13; Transcription factor which may be involved in developmental processes; Belongs to the WUS homeobox family.
    
  0.528
RGP1
Ras-related protein RGP1; May play an important role in plant growth and development.
    
  0.528
RIC2
Ras-related protein RIC2; Possesses GTPase activity; Belongs to the small GTPase superfamily. Rab family.
    
  0.528
Q0J0Q4_ORYSJ
Os09g0487900 protein.
    
  0.528
WOX7
WUSCHEL-related homeobox 7; Transcription factor which may be involved in developmental processes; Belongs to the WUS homeobox family.
    
  0.528
Q338Z5_ORYSJ
Ras-related protein Rab11D, putative, expressed.
    
  0.528
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.