STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q10QI6_ORYSJProbable ribosome biogenesis protein LOC_Os03g09920; Probable pre-rRNA processing protein involved in ribosome biogenesis. (272 aa)    
Predicted Functional Partners:
Q6YVT3_ORYSJ
cDNA clone:001-106-A06, full insert sequence.
   
  
 0.847
Q6ZD69_ORYSJ
cDNA clone:001-125-F01, full insert sequence.
   
  
 0.677
Q6K852_ORYSJ
Os02g0804300 protein.
   
  
 0.659
Q6Z7B7_ORYSJ
Os02g0114700 protein; Belongs to the NOB1 family.
   
  
 0.642
Q7XUN7_ORYSJ
tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.
   
  
 0.622
Q0DEY7_ORYSJ
Os06g0128400 protein.
   
  
 0.612
OsJ_24443
tRNA wybutosine-synthesizing protein 2 homolog; S-adenosyl-L-methionine-dependent transferase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA (By similarity); In the C-terminal section; belongs to the class I-like SAM- binding methyltransferase superfamily. TRM5/TYW2 family.
   
  
 0.607
B7EWK0_ORYSJ
cDNA clone:001-038-F07, full insert sequence.
   
  
 0.599
OsJ_33906
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the C-terminal section; belongs to the HAD-like hydrolase superfamily. MasA/MtnC family.
   
  
 0.599
Q53MQ7_ORYSJ
cDNA clone:J013157I04, full insert sequence.
   
  
 0.573
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.