STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BOR4Os05g0176800 protein. (677 aa)    
Predicted Functional Partners:
Q65X08_ORYSJ
cDNA clone:J023146P19, full insert sequence.
    
  0.657
LSM8
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
     
 0.656
Q0J7Y5_ORYSJ
Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.
     
 0.649
OsJ_01157
Probable U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
     
 0.649
A0A0P0XFK3
Os08g0413000 protein.
    
  0.639
B7E390_ORYSJ
cDNA clone:001-008-E02, full insert sequence; Belongs to the AAA ATPase family.
    
  0.639
Q0JC08_ORYSJ
Os04g0498800 protein; Belongs to the AAA ATPase family.
    
  0.639
Q10RP0_ORYSJ
Cell division cycle protein 48, putative, expressed.
    
  0.639
Q6AUP8_ORYSJ
Os05g0376200 protein; Belongs to the AAA ATPase family.
    
  0.639
Q6ETX1_ORYSJ
cDNA clone:001-114-F10, full insert sequence.
    
  0.639
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.