STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q2QXL9_ORYSJCENTRORADIALIS, putative, expressed. (173 aa)    
Predicted Functional Partners:
Q6YVE5_ORYSJ
cDNA clone:001-026-F06, full insert sequence.
    
   0.913
rps2
30S ribosomal protein S2, chloroplastic.
   
 
 0.833
Q0D7X1_ORYSJ
Os07g0202900 protein.
   
 
 0.833
Q6YU81_ORYSJ
cDNA clone:J033117P11, full insert sequence; Belongs to the universal ribosomal protein uS5 family.
   
   0.826
Q5ZA34_ORYSJ
cDNA clone:001-028-E08, full insert sequence.
   
 
 0.816
Q6Z8N1_ORYSJ
cDNA clone:J013162F01, full insert sequence.
   
   0.812
RPL27
50S ribosomal protein L27, chloroplastic; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.807
RPL5
50S ribosomal protein L5, chloroplastic; Binds 5S rRNA, forms part of the central protuberance of the 50S subunit.
   
   0.802
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
   
   0.794
Q8H065_ORYSJ
Mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed.
   
 
 0.787
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.