STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OsJ_34478CDK5RAP1-like protein; Potential regulator of CDK5 activity; Belongs to the methylthiotransferase family. MiaB subfamily. (600 aa)    
Predicted Functional Partners:
RRP46
Exosome complex exonuclease RRP46 homolog; Probable component of the exosome 3'->5' exoribonuclease complex, a complex that degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3'-untranslated regions. May form a homodimer separately from exosome complexes and function in DNA cleavage process. Binds double-stranded DNA (dsDNA) and single-stranded RNA (ssRNA), and possesses hydrolytic DNase and phosphorolytic RNase activities in vitro.
   
   0.959
Q0JKN6_ORYSJ
cDNA clone:J033022G03, full insert sequence.
    
 
 0.947
Q5JLX2_ORYSJ
cDNA, clone: J065206I07, full insert sequence.
    
 
 0.947
A0A0P0VXZ5
Os03g0340001 protein.
  
 
 0.844
OsJ_10762
Uroporphyrinogen decarboxylase 2, chloroplastic; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
 
 0.844
OsJ_02650
Uroporphyrinogen decarboxylase 1, chloroplastic; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
 
 0.844
Q6ZEY8_ORYSJ
cDNA clone:J023047J07, full insert sequence.
   
 
 0.763
B9G2C8_ORYSJ
Os09g0252000 protein.
   
   0.644
Q69UI6_ORYSJ
cDNA clone:001-119-G01, full insert sequence.
   
   0.644
Q75LC8_ORYSJ
3' exoribonuclease family, domain 1 containing protein, expressed.
   
   0.644
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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