STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q2R336_ORYSJXyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family. (295 aa)    
Predicted Functional Partners:
Q6ETY0_ORYSJ
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.871
A0A0P0W4D5
Os03g0801600 protein.
   
 
 0.840
Q7G607_ORYSJ
cDNA clone:J023011O11, full insert sequence.
   
 
 0.840
Q0DPM9_ORYSJ
Os03g0679100 protein.
    
 
 0.808
Q2QQB3_ORYSJ
Vacuolar protein sorting 26, putative, expressed.
    
 
 0.808
Q2R0X0_ORYSJ
Vacuolar protein sorting 26, putative, expressed.
    
 
 0.808
A0A0P0X1D1
Os06g0729650 protein.
    
 0.715
HCF136
Photosystem II stability/assembly factor HCF136, chloroplastic; Essential for photosystem II (PSII) biogenesis; required for assembly of an early intermediate in PSII assembly that includes D2 (psbD) and cytochrome b559; Belongs to the Ycf48 family.
    
 0.715
Q0JFL8_ORYSJ
Os01g0973300 protein.
    
 0.700
A0A0P0XY01
Os11g0104866 protein.
    
 0.671
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.