STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCR1Protein SCARECROW 1; Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity); Belongs to the GRAS family. (651 aa)    
Predicted Functional Partners:
SHR1
Protein SHORT-ROOT 1; Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification.
    
 
0.925
SHR2
Protein SHORT-ROOT 2; Putative transcription factor involved in asymmetric cell division.
    
 
0.921
A0A0P0WDK4
Os04g0566400 protein.
    
 
 0.467
Q5NA81_ORYSJ
Os01g0242200 protein.
    
 
 0.467
Q5SMY2_ORYSJ
Os01g0195000 protein.
    
 
 0.467
Q6EU15_ORYSJ
Os02g0672100 protein.
    
 
 0.467
C68
cDNA clone:J013129G20, full insert sequence; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
      
 0.455
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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