STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q336U8_ORYSJcDNA clone:J033133L07, full insert sequence. (1196 aa)    
Predicted Functional Partners:
Q0E3Q8_ORYSJ
Os02g0160000 protein.
   
 0.990
Q6Z5P0_ORYSJ
cDNA clone:J013109D01, full insert sequence.
   
 0.989
Q2QTY0_ORYSJ
Superkiller viralicidic activity 2-like 2, putative, expressed.
   
 0.964
Q53PH9_ORYSJ
DEAD/DEAH box helicase family protein, expressed.
   
 0.964
Q69T30_ORYSJ
Os02g0550700 protein.
    
 0.962
A0A0P0W8L8
Os04g0337201 protein.
   
 0.956
Q0JE33_ORYSJ
Os04g0337300 protein.
   
 0.956
Q6K6G8_ORYSJ
Os02g0474700 protein.
   
 0.956
Q2R037_ORYSJ
Os11g0660300 protein.
    
 0.929
RRP46
Exosome complex exonuclease RRP46 homolog; Probable component of the exosome 3'->5' exoribonuclease complex, a complex that degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3'-untranslated regions. May form a homodimer separately from exosome complexes and function in DNA cleavage process. Binds double-stranded DNA (dsDNA) and single-stranded RNA (ssRNA), and possesses hydrolytic DNase and phosphorolytic RNase activities in vitro.
    
 0.911
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.