STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q5JKQ3_ORYSJOs01g0559100 protein. (425 aa)    
Predicted Functional Partners:
Q2R1C1_ORYSJ
Seryl-tRNA synthetase family protein, expressed.
  
  
 
0.915
Q338I8_ORYSJ
Phenylalanyl-tRNA synthetase alpha chain, putative, expressed.
  
 
 0.844
Q2QPD4_ORYSJ
Phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed.
  
 
 0.843
A0A0P0Y1I8
Os11g0312340 protein.
     
 0.808
KTI12
Protein KTI12 homolog; Elongator-associated factor that is not a structural subunit but rather transiently contacts Elongator, presumably to promote its interaction with elongation competent pol II. Regulates both meristem activity and organ growth; acts as a positive regulator of adaxial leaf patterning. Required for an early step in synthesis of 5-carbamoylmethyl (ncm5) groups present on uridines (ncm5U) at the wobble position in tRNA (By similarity).
     
 0.808
Q0JDK3_ORYSJ
Os04g0398300 protein.
   
  
 0.801
Q6ZD35_ORYSJ
Os08g0538000 protein.
   
  
 0.801
Q5W6G3_ORYSJ
SAGA-associated factor 11.
    
 
 0.787
ADA2
Transcriptional adapter ADA2; Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity).
    
 
 0.729
Q5JKV2_ORYSJ
Os01g0743400 protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.726
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.