STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q5JKV2_ORYSJOs01g0743400 protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (399 aa)    
Predicted Functional Partners:
A0A0P0X554
Os07g0278400 protein.
     
 0.950
Q2QP62_ORYSJ
Tryptophanyl-tRNA synthetase, putative, expressed; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.950
Q2R1C0_ORYSJ
Os11g0611100 protein.
  
 
 0.729
Q2R1C1_ORYSJ
Seryl-tRNA synthetase family protein, expressed.
  
 
 0.729
Q10QF5_ORYSJ
cDNA clone:001-029-C08, full insert sequence.
  
 
 0.726
Q5JKQ3_ORYSJ
Os01g0559100 protein.
  
 
 0.726
A0A0P0UX97
Os01g0120300 protein.
  
 
 0.708
Q6AT40_ORYSJ
cDNA clone:J033058I10, full insert sequence.
  
  
 0.708
Q2QPD4_ORYSJ
Phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed.
  
  
 0.688
Q338J4_ORYSJ
Methionyl-tRNA synthetase, putative, expressed; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.680
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.