STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y5814_ORYSJB3 domain-containing protein Os05g0481400. (279 aa)    
Predicted Functional Partners:
Q8H060_ORYSJ
Retinoblastoma-binding protein, putative, expressed.
    
 0.755
Q656M9_ORYSJ
Os06g0255200 protein.
    
 0.720
A0A0P0Y588
Os11g0643700 protein.
    
 0.703
Q0DY89_ORYSJ
Os02g0708600 protein.
   
 0.693
Q0DY90_ORYSJ
cDNA clone:002-114-G07, full insert sequence.
   
 0.693
Q5ZBF5_ORYSJ
cDNA clone:J023044A10, full insert sequence; Belongs to the WD repeat SEC13 family.
    
 0.670
SE14
Lysine-specific demethylase SE14; Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1.
    
 0.669
A0A0N7KFB4
Os02g0491900 protein.
    
  0.631
A0A0N7KHT9
Os03g0679800 protein.
    
  0.631
A0A0N7KHU0
Os03g0680600 protein.
    
  0.631
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.