STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q5N810_ORYSJcDNA clone:001-111-G05, full insert sequence. (123 aa)    
Predicted Functional Partners:
Q5ZA34_ORYSJ
cDNA clone:001-028-E08, full insert sequence.
   
   0.781
Q6ZL47_ORYSJ
Os07g0544900 protein.
   
 
 0.772
RPL27
50S ribosomal protein L27, chloroplastic; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.764
Q658I1_ORYSJ
cDNA clone:001-017-D12, full insert sequence.
   
 
 0.738
A0A0P0VZ26
Os03g0388366 protein.
   
 
 0.719
Q7EYV4_ORYSJ
cDNA clone:006-211-D04, full insert sequence.
   
 
 0.719
Q0DHP9_ORYSJ
Os05g0452600 protein.
   
   0.708
A3A2Y2_ORYSJ
Os02g0137200 protein; Belongs to the universal ribosomal protein uL3 family.
   
   0.705
Q9LIT4_ORYSJ
cDNA clone:J033064P19, full insert sequence; Belongs to the universal ribosomal protein uL3 family.
   
   0.705
Q6Z8N1_ORYSJ
cDNA clone:J013162F01, full insert sequence.
   
   0.702
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.