STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q5QLQ9_ORYSJcDNA clone:002-115-A10, full insert sequence. (133 aa)    
Predicted Functional Partners:
ARP9
Actin-related protein 9; Belongs to the actin family. ARP8 subfamily.
    
 0.908
ARP4
Actin-related protein 4; Involved in several developmental processes including organization of plant organs, flowering time, anther development, flower senescence and fertility, probably by regulating the chromatin structure; Belongs to the actin family. ARP4 subfamily.
   
 0.871
ARP5
Actin-related protein 5.
    
 0.869
Q6ZC85_ORYSJ
cDNA clone:J013129O14, full insert sequence.
    
 0.856
Q6Z2N2_ORYSJ
cDNA clone:J033106M17, full insert sequence.
    
 0.850
Q2R177_ORYSJ
cDNA clone:J023014N04, full insert sequence.
    
 0.838
A0A0N7KJC3
General transcription factor IIH subunit.
    
 0.815
B7FAF4_ORYSJ
RuvB-like helicase; Belongs to the RuvB family.
    
 0.815
Q5QMH1_ORYSJ
RuvB-like helicase; Belongs to the RuvB family.
    
 0.815
OJ1365_D05.1
Probable histone H2A variant 3; Variant histones H2A are synthesized throughout the cell cycle and are very different from classical S-phase regulated H2A. May replace conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone cod [...]
   
 0.812
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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