STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q5VPF3_ORYSJcDNA clone:001-207-E05, full insert sequence. (311 aa)    
Predicted Functional Partners:
Q7XZG6_ORYSJ
Pre-mRNA branch site p14, putative, expressed.
    
 
 0.864
A0A0P0XE29
Splicing factor subunit; Belongs to the SF3B5 family.
    
 
 0.809
Q6Z8Q6_ORYSJ
Splicing factor subunit; Belongs to the SF3B5 family.
    
 
 0.809
A0A0P0VEN2
Os02g0137400 protein.
    
 
 0.743
Q0D7W8_ORYSJ
Os07g0203800 protein.
    
 
 0.743
Q0D7W9_ORYSJ
Os07g0203700 protein.
    
 
 0.743
A0A0P0VEK6
Os02g0142300 protein.
    
 
 0.686
A0A0P0VEP5
Os02g0147300 protein.
    
 
 0.686
A0A0P0VIZ4
Os02g0478900 protein.
    
 
 0.686
A0A0P0WTW6
Os06g0214550 protein.
    
 
 0.686
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.