STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q5VQX3_ORYSJOs01g0805000 protein. (167 aa)    
Predicted Functional Partners:
Q5NBK8_ORYSJ
cDNA clone:J013095M10, full insert sequence.
   
   0.943
Q10NM5_ORYSJ
50S ribosomal protein L4, chloroplast, putative, expressed.
   
   0.922
Q75IA5_ORYSJ
30S ribosomal protein S13, putative, expressed; Belongs to the universal ribosomal protein uS13 family.
   
   0.896
B7E324_ORYSJ
cDNA clone:001-018-H07, full insert sequence.
   
   0.887
RPL27
50S ribosomal protein L27, chloroplastic; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.833
Q67W51_ORYSJ
50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
   
   0.827
RPL18
50S ribosomal protein L18, chloroplastic; Binds 5S rRNA, forms part of the central protuberance of the 50S subunit.
   
   0.827
Q94J17_ORYSJ
cDNA clone:001-039-H01, full insert sequence; Belongs to the universal ribosomal protein uL13 family.
   
   0.827
Q0JKF5_ORYSJ
cDNA clone:001-110-B01, full insert sequence.
   
   0.826
Q6KA00_ORYSJ
cDNA clone:001-014-G04, full insert sequence.
   
   0.826
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.