STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q5Z8T9_ORYSJOs06g0706700 protein. (116 aa)    
Predicted Functional Partners:
A0A0P0XPV0
Os09g0544500 protein.
      
 0.485
Q6K7A1_ORYSJ
cDNA clone:J013042H05, full insert sequence.
      
 0.485
Q7XSW9_ORYSJ
Os04g0224600 protein.
      
 0.478
BC1LP1
COBRA-like protein 7; Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface (By similarity); Belongs to the COBRA family.
      
 0.446
A0A0P0UYP2
Os01g0172900 protein; Belongs to the glycosyl hydrolase 28 family.
      
 0.445
Q10SP4_ORYSJ
YOR3513c, putative, expressed.
      
 0.426
Q8RU96_ORYSJ
Os01g0788950 protein.
      
 0.426
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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