STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COPT3Copper transporter 3; Involved in the transport of copper; Belongs to the copper transporter (Ctr) (TC 1.A.56) family. SLC31A subfamily. (150 aa)    
Predicted Functional Partners:
CCS
Copper chaperone for superoxide dismutase, chloroplastic; Copper chaperone for superoxide dismutases (SODs). Binds copper ions and delivers them specifically to SODs. Is required for assistance in SODs disulfide bond formation and thereby activation of SODs (By similarity).
    
 
 0.456
HMA5
Copper-transporting ATPase HMA5; Copper (Cu) transporter that plays an essential role in promoting translocation of Cu from roots to shoots. Involved in loading Cu to the xylem of the roots and other organs, including panicles. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.
    
 
 0.444
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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