STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q65WY6_ORYSJOs05g0182800 protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (796 aa)    
Predicted Functional Partners:
Q338J4_ORYSJ
Methionyl-tRNA synthetase, putative, expressed; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.998
P0561B08.33
Probable methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.998
GATB
Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
  
 0.993
Q9FP55_ORYSJ
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.990
Q69UI8_ORYSJ
cDNA clone:001-011-G09, full insert sequence; Belongs to the eukaryotic ribosomal protein P1/P2 family.
   
 0.984
Q0JBZ7_ORYSJ
Os04g0501000 protein; Belongs to the universal ribosomal protein uL23 family.
   
 0.982
Q94CM9_ORYSJ
Os01g0348700 protein; Belongs to the universal ribosomal protein uL23 family.
   
 0.982
A0A0P0VSV2
Os03g0141000 protein.
   
 0.979
A0A0P0XJ86
Os08g0541950 protein; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.979
A0A0P0XW06
Os10g0465800 protein.
   
 0.979
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.