STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q65XN0_ORYSJcDNA clone:J033127E04, full insert sequence. (320 aa)    
Predicted Functional Partners:
B1153E06.24
Zinc finger CCCH domain-containing protein 45.
   
 0.999
A0A0N7KEF1
Os01g0951000 protein.
   
 0.994
Q2QX64_ORYSJ
cDNA clone:J023025N02, full insert sequence.
   
 0.993
OJ1003_C09.22
Cleavage and polyadenylation specificity factor subunit 2; CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition.
   
 0.991
B1129G05.17
Zinc finger CCCH domain-containing protein 7.
   
 0.985
Q84JJ2_ORYSJ
Cleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed.
   
 0.980
CPSF1_ORYSJ
Probable cleavage and polyadenylation specificity factor subunit 1; CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction (By similarity).
    
 0.977
Q0JMY6_ORYSJ
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.974
Q5VRS7_ORYSJ
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.974
Q6K9Q5_ORYSJ
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.974
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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