STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OsJ_21395Formate dehydrogenase 2, mitochondrial; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Involved in the cell stress response; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. (378 aa)    
Predicted Functional Partners:
Q652S1_ORYSJ
cDNA clone:J013116E07, full insert sequence.
  
 
 0.915
Q10LR5_ORYSJ
Fumarate hydratase 1, mitochondrial, putative, expressed.
  
 
 0.898
MS
Malate synthase; Belongs to the malate synthase family.
  
 
 0.896
OsJ_36976
Malate dehydrogenase, glyoxysomal.
  
 0.888
Q6YYW3_ORYSJ
cDNA clone:001-205-B06, full insert sequence.
  
 0.888
Q7FAT9_ORYSJ
Malate dehydrogenase.
  
 0.888
MDHC_ORYSJ
Malate dehydrogenase, cytoplasmic.
  
 0.888
Q7XZW5_ORYSJ
Malate dehydrogenase.
  
 0.888
Q8H4E0_ORYSJ
cDNA clone:001-030-A01, full insert sequence.
  
 0.887
A0A0P0XLG1
Os09g0315700 protein.
    
 0.868
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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