STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAF1Transcription initiation factor TFIID subunit 1; Largest component and core scaffold of the TFIID basal transcription factor complex. (1810 aa)    
Predicted Functional Partners:
Q5QMA1_ORYSJ
cDNA clone:J013126J05, full insert sequence.
    
 0.992
Q69MK0_ORYSJ
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
 0.992
Q8LRG9_ORYSJ
cDNA clone:J023036C23, full insert sequence.
    
 0.992
B9EW84_ORYSJ
Os01g0338100 protein.
    
 0.983
Q6H7I0_ORYSJ
cDNA clone:J023007I15, full insert sequence.
  
 
 0.983
A0A0P0V621
Os01g0648500 protein.
    
 0.979
A0A0P0X3D9
Os07g0205200 protein.
    
 0.979
A0A0P0XLI9
Os09g0410125 protein.
   
 0.979
A0A0P0XM51
Os09g0409950 protein.
   
 0.979
Q10IZ0_ORYSJ
Transcription initiation factor TFIID component TAF4 family protein, expressed.
    
 0.979
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.