STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
4CL4Probable 4-coumarate--CoA ligase 4; Belongs to the ATP-dependent AMP-binding enzyme family. (559 aa)    
Predicted Functional Partners:
PAL
Phenylalanine ammonia-lyase; This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton.
  
 
 0.976
COA1
Caffeoyl-CoA O-methyltransferase.
   
 0.959
Q6K6Q1_ORYSJ
Phenylalanine ammonia-lyase.
  
 
 0.944
Q7X720_ORYSJ
Phenylalanine ammonia-lyase.
  
 
 0.939
ALDH1a
cDNA clone:002-117-A10, full insert sequence; Belongs to the aldehyde dehydrogenase family.
  
 0.937
Q94JC6_ORYSJ
Os01g0591300 protein; Belongs to the aldehyde dehydrogenase family.
  
 0.934
Q0DB86_ORYSJ
Os06g0592400 protein.
  
 0.930
HCT1
Hydroxycinnamoyltransferase 1; Hydroxycinnamoyl transferase that catalyzes the transfer of an acyl from p-coumaryol-CoA to various acyl acceptors. Can use feruloyl-CoA and caffeoyl-CoA as acyl donors. Belongs to the plant acyltransferase family.
   
 0.928
A0A0P0XCT7
Os08g0205000 protein.
    
 0.920
A0A0P0V6T5
Os01g0688200 protein.
    
 0.915
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.