STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q6AT43_ORYSJBranched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (409 aa)    
Predicted Functional Partners:
Q6YZH8_ORYSJ
cDNA clone:J033082L10, full insert sequence.
  
 0.989
Q2QWT8_ORYSJ
2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial, putative, expressed.
  
 
 0.942
A0A0P0YCF4
Os12g0589898 protein.
  
 0.940
Q2QXY9_ORYSJ
2-isopropylmalate synthase B, putative, expressed.
  
 0.940
Q2RAP8_ORYSJ
2-isopropylmalate synthase B, putative, expressed.
  
 0.940
A0A0P0VX85
Os03g0338000 protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.935
Q10R45_ORYSJ
Alanine-glyoxylate aminotransferase 2, mitochondrial, putative, expressed; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.935
Q65WV6_ORYSJ
Os05g0475400 protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.935
Q8W314_ORYSJ
Threonine dehydratase.
  
 
 0.935
A0A0P0VYR6
Os03g0376100 protein.
   
 0.926
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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