STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q6EP65_ORYSJcDNA clone:001-119-B01, full insert sequence. (80 aa)    
Predicted Functional Partners:
A0A0P0UYZ4
Os01g0185400 protein.
    
 0.908
A0A0P0VKU6
Os02g0581500 protein.
    
 0.843
A0A0P0VL09
Os02g0581400 protein.
    
 0.843
B7FAF4_ORYSJ
RuvB-like helicase; Belongs to the RuvB family.
   
 0.817
Q5QMH1_ORYSJ
RuvB-like helicase; Belongs to the RuvB family.
   
 0.817
A0A0P0VPS2
Os02g0746850 protein.
    
 0.811
A0A0P0XT80
Os10g0338966 protein.
    
 0.811
A0A0P0YAP0
Os12g0495587 protein.
    
 0.811
A0A0P0YAY3
Os12g0490333 protein.
    
 0.811
Q0JP80_ORYSJ
Os01g0237500 protein.
    
 0.811
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.