STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q6F325_ORYSJOs05g0490200 protein. (384 aa)    
Predicted Functional Partners:
A0A0N7KT94
Os11g0638000 protein.
  
 0.967
C7IWA0_ORYSJ
Os01g0225200 protein.
  
 0.967
Q6Z9X4_ORYSJ
Os08g0407000 protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 0.967
Q10R16_ORYSJ
tRNA methyl transferase family protein, expressed.
  
 0.905
A0A0P0V1M3
Os01g0316100 protein.
   
 
 0.674
A0A0P0V3C3
Os01g0516300 protein.
   
 
 0.674
A0A0P0V3D4
Os01g0516200 protein.
   
 
 0.674
A0A0P0X0M6
Os06g0698785 protein.
   
 
 0.674
A0A0P0XPG5
Os09g0498500 protein.
   
 
 0.674
Q2QP28_ORYSJ
Sarcosine oxidase, putative, expressed.
   
 
 0.674
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.