STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q6I5X9_ORYSJOs05g0389800 protein. (1070 aa)    
Predicted Functional Partners:
A0A0P0VC44
Os01g0916800 protein.
   
 0.954
C3H15_ORYSJ
Zinc finger CCCH domain-containing protein 15.
    
 0.954
Q0JLQ1_ORYSJ
Os01g0582400 protein.
   
 0.946
Q6EQW6_ORYSJ
cDNA clone:J023052C02, full insert sequence.
   
 0.940
Q84MU4_ORYSJ
Pre-mRNA splicing factor PRP17, putative, expressed.
   
 0.940
Q6K7Q7_ORYSJ
Os02g0827300 protein.
   
 0.937
Q7XIR8_ORYSJ
Os07g0508000 protein.
  
 
0.935
Q10DW3_ORYSJ
Splicing factor 3A subunit 3, putative, expressed.
   
 0.933
Q10NP6_ORYSJ
Splicing factor 3A subunit 2, putative, expressed.
    
 0.924
A0A0P0XZW1
Os11g0151600 protein.
   
 0.918
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.