STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q6K5H8_ORYSJcDNA clone:J013089P10, full insert sequence. (266 aa)    
Predicted Functional Partners:
Q10P76_ORYSJ
cDNA clone:006-202-G02, full insert sequence.
   
 
 0.697
Q53N80_ORYSJ
Rieske domain containing protein, expressed.
  
  
 0.574
Q6YW78_ORYSJ
cDNA clone:J013111G22, full insert sequence.
   
  
 0.556
Q5ZA98_ORYSJ
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
  
  
 0.540
Q6ZI79_ORYSJ
cDNA clone:001-023-G04, full insert sequence.
   
  
 0.527
A0A0P0X1D1
Os06g0729650 protein.
   
  
 0.524
HCF136
Photosystem II stability/assembly factor HCF136, chloroplastic; Essential for photosystem II (PSII) biogenesis; required for assembly of an early intermediate in PSII assembly that includes D2 (psbD) and cytochrome b559; Belongs to the Ycf48 family.
   
  
 0.524
Q6Z3F9_ORYSJ
cDNA clone:001-204-F05, full insert sequence.
   
  
 0.522
A0A0P0XF80
Os08g0347500 protein.
   
 
 0.512
Q109L0_ORYSJ
PsbP family protein, expressed.
   
 
 0.512
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.